Of course they would! He was only hanging around the agency to try and find information on their missing traitor Miyano Shiho. Which is why I asked Kid to disguise as her and fake her death.

Now that they think she's dead there's no reason for him to continue hanging around the agency-after all, The Organization wouldn't want to risk getting too close to a famous detective-not when there's a chance they'd end up exposed. If they're not done with the agency that can only mean there's something else in Beika they want investigated.